Reference for SHIFTX. Search for SHIFTX

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SHIFTX

ShiftX

ShiftX (Shifts from X-ray structures) is a freely available web server for rapidly calculating protein chemical shifts from protein X-ray (or NMR) coordinates

ShiftX

SHIFTCOR

of interest [1]. The predicted chemical shifts are calculated using the ShiftX program. The SHIFTCOR program was originally used to construct a database

SHIFTCOR

Probabilistic Approach for Protein NMR Assignment Validation

Data types captured Data input: Chemical shift assignments in BMRB, NEF, SHIFTX or SHIFTY format; Data output: Reference-corrected chemical shift assignments

Probabilistic Approach for Protein NMR Assignment Validation

Probabilistic_Approach_for_Protein_NMR_Assignment_Validation

Protein chemical shift prediction

All the computational speed tests for SPARTA, SPARTA+, SHIFTS, CamShift, SHIFTX and SHIFTX2 were performed on the same computer using the same set of proteins

Protein chemical shift prediction

Protein_chemical_shift_prediction

Protein chemical shift re-referencing

Figure 1 for details). SHIFTCOR uses the chemical shift calculation program SHIFTX to predict 1Hα, 13Cα,15N shifts based on the 3D structure coordinates of

Protein chemical shift re-referencing

Protein_chemical_shift_re-referencing

CS23D

prediction, and chemical shift refinement. CS23D makes use of RefDB and ShiftX. CS23D accepts chemical shift files in either SHIFTY or BMRB formats. A

CS23D

David S. Wishart

Canadian bioinformatician (born 1961)

predict protein chemical shifts from 3D coordinates using programs such as ShiftX and ShiftX2. At the same time he also developed methods to re-reference

David S. Wishart

David_S._Wishart

Nuclear magnetic resonance chemical shift re-referencing

Figure 1 for details). SHIFTCOR uses the chemical shift calculation program SHIFTX to predict 1Hα, 13Cα,15N shifts based on the 3D structure coordinates of

Nuclear magnetic resonance chemical shift re-referencing

Nuclear_magnetic_resonance_chemical_shift_re-referencing

RefDB (chemistry)

assembled by using a structure-based chemical shift calculation program (called SHIFTX) to calculate expected protein (1)H, (13)C and (15)N chemical shifts from

RefDB (chemistry)

RefDB_(chemistry)

Protein Structure Evaluation Suite & Server

System for validating protein structures

Specifically, PROSESS assesses the agreement between observed chemical shifts and ShiftX-predicted HA, CA, CB, N, C, and HN NMR chemical shifts. In addition to its

Protein Structure Evaluation Suite & Server

Protein_Structure_Evaluation_Suite_&_Server

GeNMR

sampling and structural refinement using non-differentiable scores, such as ShiftX chemical shift scores. GeNMR's genetic algorithm creates a population of

GeNMR

CING (biomolecular NMR structure)

(Software) DSSP (algorithm) MOLMOL Matplotlib Nmrpipe PROCHECK/Aqua POV-Ray ShiftX TALOS+ WHAT_CHECK Archived 2011-05-01 at the Wayback Machine Wattos XPLOR-NIH

CING (biomolecular NMR structure)