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Protein structure classification tool
The DSSP algorithm is the standard method for assigning secondary structure to the amino acids of a protein, given the atomic-resolution coordinates of
DSSP_(algorithm)
Topics referred to by the same term
DSSP may refer to: DSSP (hydrogen bond estimation algorithm), an algorithm that determines the secondary structure of protein subsequences from the coordinates
DSSP
In addition to the hydrogen bond criteria used by the more common DSSP algorithm, the STRIDE assignment criteria also include dihedral angle potentials
STRIDE_(algorithm)
DSSP stands for digital shape sampling and processing. It is an alternative and often preferred way of describing "reverse engineering" software and hardware
DSSP_(imaging)
German computational biologist
the Families of Structurally Similar Proteins (FSSP) database and the DSSP algorithm for assigning secondary structure to the amino acids of a protein, given
Chris_Sander_(scientist)
Soviet ternary computer
Programming (DSSP). DSSP emulates the "Setun 70" architecture on binary computers, thus it fulfills the advantages of structured programming. DSSP programming
Setun
Type of biological prediction
the results of the DSSP algorithm (or similar e.g. STRIDE) applied to the crystal structure of the protein. Specialized algorithms have been developed
Protein_structure_prediction
Method used to investigate protein structure
of a prediction is determined by comparing it to the results of the DSSP algorithm applied to the crystal structure of the protein; for nucleic acids,
PSIPRED
CING: 3DNA Collaborative Computing Project for NMR CYANA (Software) DSSP (algorithm) MOLMOL Matplotlib Nmrpipe PROCHECK/Aqua POV-Ray ShiftX TALOS+ WHAT_CHECK
CING (biomolecular NMR structure)
CING_(biomolecular_NMR_structure)
Bioinformatics subfield
without the necessity of a homologous known 3D structure. Despite the new algorithms and methods proposed in the last years, de novo protein structure prediction
Structural_bioinformatics
structure elements than the DSSP algorithm (64% helices and beta strands for VADAR versus 51% helices and beta strands for DSSP). In particular, VADAR’s
Volume Area Dihedral Angle Reporter
Volume_Area_Dihedral_Angle_Reporter
System for validating protein structures
Index GeNMR Protein structure prediction Structural bioinformatics DSSP (algorithm) Berjanskii, Mark; Yongjie Liang; Jianjun Zhou; Peter Tang; Paul Stothard;
Protein Structure Evaluation Suite & Server
Protein_Structure_Evaluation_Suite_&_Server
examples are widespread in the literature. The third is necessary because algorithms for both multiple sequence alignment and structural alignment use heuristics
List of alignment visualization software
List_of_alignment_visualization_software
cavities and calculate their size. The secondary structures were calculated by DSSP. The single amino acid annotations were fetched from UniProt database, then
Computer Atlas of Surface Topography of Proteins
Computer_Atlas_of_Surface_Topography_of_Proteins
Field of molecular evolution
in a 2019 preprint and published in 2020 , their approach treated seven DSSP-defined secondary-structure states as evolving phylogenetic characters and
Protein structural phylogenetics
Protein_structural_phylogenetics
Study of evolutionary relationships between organisms
high-resolution crystal structures, enabling residue-level comparison of DSSP-assigned secondary-structure states and estimation of a 1-PAM secondary-structure
Phylogenetics
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DSSP ALGORITHM
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