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the identification of proteins through proteogenomics is comparative proteogenomics. Comparative proteogenomics compares proteomic data from multiple related
Proteogenomics
Large-scale study of proteins
as an important tool for the discovery of biomarkers of disease. In proteogenomics, proteomic technologies such as mass spectrometry are used for improving
Proteomics
Proteogenomics research scientist
is a Taiwanese physical chemist who leads international projects in proteogenomics. After graduating from National Taiwan University, Chen completed doctoral
Yu-Ju_Chen
American biotechnology company
modification-specific antibodies. Reagents are created for use in flow cytometry, proteogenomics, ELISA, immunoprecipitation, Western blotting, immunofluorescence microscopy
BioLegend
Short length polypeptides
to determine if polypeptides are, in fact, translated from a sORF. Proteogenomics combines proteomics, genomics, and transciptomics. This is important
Micropeptide
Application of mass spectrometry
in protein folding studies. In what is now commonly referred to as proteogenomics, peptides identified with mass spectrometry are used for improving gene
Protein_mass_spectrometry
Functionless relative of a gene
approximately 12,000–14,000 pseudogenes in the human genome. A 2016 proteogenomics analysis using mass spectrometry of peptides identified at least 19
Pseudogene
Highly aggressive brain tumor, mostly found in children
Jackson ER, Vitanza NA, Cain JE, et al. (January 2022). "Pharmaco-proteogenomic profiling of pediatric diffuse midline glioma to inform future treatment
Diffuse_midline_glioma
Human chromosomal condition
Zadesenets, K. S.; Rubtsov, N. B. (2025-06-03). "From cytogenetics to proteogenomics: new horizons in the study of aneuploidies". Vavilov Journal of Genetics
XXYYY_syndrome
Protein(s) forming a major part of an organism's immune system
Castellana NE, Pham V, Arnott D, Lill JR, Bafna V (June 2010). "Template proteogenomics: sequencing whole proteins using an imperfect database". Molecular &
Antibody
Open-Source Workflow Management Platform
(2022). "Enhanced protein isoform characterization through long-read proteogenomics". Genome Biology. 23 (1): 69. doi:10.1186/s13059-022-02624-y. PMC 8892804
Nextflow
fluid mechanics engineer and university professor 賴義雄博士 Yu-Ju Chen, proteogenomics researcher 陳玉如 David Ho, medical researcher 何大一 Henry Lee*, forensic
List_of_Taiwanese_people
Suffix in biology
Uses proteomics mass spectrometry data for protein expression studies Proteogenomics: An emerging field of biological research at the intersection of proteomics
Omics
Genus of annelid worms
endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics. (October 20, 2011). Retrieved June 1, 2015, from Nature Measurements
Tevnia
Study of all proteins in an environment
(also community proteomics, environmental proteomics, or community proteogenomics) is an umbrella term for experimental approaches to study all proteins
Metaproteomics
(BUP or shotgun) and top down (TDP). The former, a peptide-centric or proteogenomic approach, infers (often with quite limited data) the identities of canonical
Top-down_proteomics
Range of methods designed for assigning cell types
Rininger AB, Newhouse D, et al. (2023-05-03). "Ultra High-plex Spatial Proteogenomic Investigation of Giant Cell Glioblastoma Multiforme Immune Infiltrates
Spatial_transcriptomics
Women in science from 2001 to 2100 A.D
Studer (1944–2025), ornithologist and environmentalist Yu-Ju Chen, proteogenomics researcher Chung-Pei Ma (born 1966), astrophysicist, now in the United
List of women scientists in the 21st century
List_of_women_scientists_in_the_21st_century
Swiss microbiologist
Chaffron S, Innerebner G, Roschitzki B, et al. (2009). "Community proteogenomics reveals insights into the physiology of phyllosphere bacteria" (PDF)
Julia_Vorholt
Indian-American statistician
Bayesian Hierarchical Varying-Sparsity Model with Application to Cancer Proteogenomics. Journal of American Statistical Association. 2018. Ni, Y, Stingo S
Veera_Baladandayuthapani
Scientific award
environmental science integrating chemical, biological, mineralogical, and proteogenomic influences 2012 LS Africa and the Arab States Jill Farrant South Africa
L'Oréal-UNESCO For Women in Science Awards
L'Oréal-UNESCO_For_Women_in_Science_Awards
Protein found in humans
Ruggles KV, Gillette MA, Clauser KR, Wang P, et al. (June 2016). "Proteogenomics connects somatic mutations to signalling in breast cancer". Nature.
CCDC184
J.L.C.M.; Bafna, V.; Rasinger, J.D. (December 2023). "Multi-tissue proteogenomic analysis for mechanistic toxicology studies in non-model species". Environment
Maximum acceptable toxicant concentration
Maximum_acceptable_toxicant_concentration
Chemical compound
Jillian (2009). "Unravelling ancient microbial history with community proteogenomics and lipid geochemistry". Nature Reviews Microbiology. 7 (8): 601–609
Okenane
Zhongyi; Li, Jing; Ren, Yijiu; Xu, Junfang; Dang, Yifang; et al. (2025). "Proteogenomic characterization reveals tumorigenesis and progression of lung cancer
Maria_Hatzoglou
proteomics search, cross-linking mass spectrometry (XL-MS) search, proteogenomic search, and label-free quantification (LFQ) capabilities. MSFragger
List of mass spectrometry software
List_of_mass_spectrometry_software
Family of viruses
pallidipes salivary gland hypertrophy virus from Ethiopian tsetse flies: a proteogenomics approach". Journal of General Virology. 97 (4): 1010–1031. doi:10.1099/jgv
Hytrosaviridae
Cancer research center in Virginia, U.S.
institutions, as well as the Cooperative Human Tissue Network and the Applied Proteogenomics Organizational Learning and Outcomes (APOLLO) network. Patients who
UVA Comprehensive Cancer Center
UVA_Comprehensive_Cancer_Center
Species of archaea
Retrieved 2022-07-12. Werner, J (Aug 2014). "Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated
Halorhabdus_tiamatea
Genus of bacteria
Leeuwenhoek 101(3): 551-560 Delmotte, N., et al. (2009). "Community proteogenomics reveals insights into the physiology of phyllosphere bacteria." Proc
Dyadobacter
Study of the interaction of soil and life
approaches, such as metagenomics, metatranscriptomics, proteomics and proteogenomics, are rapidly advancing, at least for the microbial world. Metaphenomics
Soil_ecology
Biomedical and genomics research institute in New York, US
Cancer Clinical Proteomics Research". "Mount Sinai Designated as National Cancer Institute Proteogenomics Data Analysis Center | Mount Sinai - New York".
Icahn_Genomics_Institute
Description of the structure and function of a genome
frameshifts and translation initiation factors. To solve this problem, proteogenomics based approaches are employed, which utilize information from expressed
DNA_annotation
Canadian protein biochemist (born 1958)
"Toward an Upgraded Honey Bee (Apis melliferaL.) Genome Annotation Using Proteogenomics". Journal of Proteome Research. 15 (2): 411–421. doi:10.1021/acs.jproteome
Ronald_Beavis
Malaria vaccine
Flannery EL, Vaughan AM, Morrison RD, Patrapuvich R, et al. (July 2017). "Proteogenomic analysis of the total and surface-exposed proteomes of Plasmodium vivax
RTS,S
Mammalian protein found in humans
Professionals". Retrieved 8 July 2021. Kim BJ, et al. (July 2023). "Proteogenomic Approaches for the Identification of NF1/Neurofibromin-depleted Estrogen
Neurofibromin
Protein found in humans
1093/nar/gks1193. PMC 3531084. PMID 23193258. Ahn, Jung-Mo; et al. (Nov 2013). "Proteogenomic Analysis of Human Chromosome 9-Encoded Genes from Human Samples and
CCDC187
Species of roundworm
PMID 24209628. Borchert, N; Dieterich, C; Krug, K; et al. (2010). "Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode
Pristionchus_pacificus
Vamsi Chourasia, "Hardware IP protection by exploiting IP vendor's proteogenomic BioMarker as digital watermark during behavioral synthesis", Scientific
Hardware_watermarking
Species of bacterium
Vallenet, D; Armengaud, J; Blanchard, L (March 2014). "RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant
Deinococcus_deserti
Gene whose sequence partially overlaps the reading frame of another gene
an avalanche of overlapping genes and ORFs within numerous genomes. Proteogenomic methods have been essential in discovering numerous overlapping genes
Overlapping_gene
Chinese-born biomolecular scientist
DA, Smith RD, Chan DW, Rodland KD, and the CPTAC investigators. Deep proteogenomic characterization of human ovarian cancer. Cell. 2016; 166: 755–765.
Hui_Zhang_(pathologist)
Swedish-American physicist and mass spectrometrist
S; Ellis, MJ; Fenyö, D (2015). "An analysis of the sensitivity of proteogenomic mapping of somatic mutations and novel splicing events in cancer". Mol
David_Fenyő
Protein-coding gene in the species Homo sapiens
Ellis MJ, Carr SA, Tabb DL, Coffey RJ, Slebos RJ, Liebler DC (2014). "Proteogenomic characterization of human colon and rectal cancer". Nature. 513 (7518):
Hepatocyte nuclear factor 4 alpha
Hepatocyte_nuclear_factor_4_alpha
Species of bacterium
Andrzej J.; Deobald, Lee A.; Kerk, David; Cummings, David E. (2010). "Proteogenomic and functional analysis of chromate reduction in Acidiphilium cryptum
Acidiphilium_cryptum
Protein-coding gene in the species Homo sapiens
PMC 2830554. PMID 20209111. Puppione D, Whitelegge JP (October 2013). "Proteogenomic Review of the Changes in Primate apoC-I during Evolution". Frontiers
Apolipoprotein_C-I
Cancer cell biologist
"Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer", Cell 166 (3): 755–765 Suhas Vasaikar et al. (2019) "Proteogenomic Analysis
Karin_Rodland
Protein-coding gene in humans
Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, et al. (September 2014). "Proteogenomic characterization of human colon and rectal cancer". Nature. 513 (7518):
WD repeat and coiled coil containing protein
WD_repeat_and_coiled_coil_containing_protein
Indian computational biologist
at IGIB. Combining genomics and proteomics, Dr. Dash ventured into proteogenomics, developing computational algorithms and associated software suites
Debasis_Dash
System in bioinformatics analysis
GFS because they had not been previously annotated. In February 2013, proteogenomic mapping research was done with ENCODE to identify translational regions
Genome-based peptide fingerprint scanning
Genome-based_peptide_fingerprint_scanning
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