Searches , social queries for SEQUENCE ONTOLOGY
Search references for SEQUENCE ONTOLOGY. Phrases containing SEQUENCE ONTOLOGY
See searches and references containing SEQUENCE ONTOLOGY!
Search references for SEQUENCE ONTOLOGY. Phrases containing SEQUENCE ONTOLOGY
See searches and references containing SEQUENCE ONTOLOGY!SEQUENCE ONTOLOGY
Ontology for annotation of sequences
The Sequence Ontology (SO) is an ontology suitable for describing biological sequences. It is designed to make the naming of DNA sequence features and
Sequence_Ontology
Specification of a conceptualization
In information science, an ontology encompasses a representation, formal naming, and definitions of the categories, properties, and relations between the
Ontology (information science)
Ontology_(information_science)
Field that studies the methods and methodologies for building ontologies
various ontology initiatives, amongst which are: The Generic Model Organism Project (GMOD) Gene Ontology Consortium Sequence Ontology Ontology Lookup Service
Ontology_engineering
File format for genomic features
follows: Simply put, CDS means "Coding DNA Sequence". The exact meaning of the term is defined by Sequence Ontology (SO). According to the GFF3 specification:
General_feature_format
Philosophical study of being
Ontology is the philosophical study of being. It is traditionally understood as the subdiscipline of metaphysics focused on the most general features of
Ontology
Representational model in metaphysics and information science
process ontology refers to a universal model of the structure of the world as an ordered wholeness. Such ontologies are fundamental ontologies, in contrast
Process_ontology
Family of knowledge representation languages
The Web Ontology Language (OWL) is a family of knowledge representation languages for authoring ontologies. Ontologies are a formal way to describe taxonomies
Web_Ontology_Language
Collaborative development organization
CheBI ontology, the Disease Ontology, the Plant Ontology, the Sequence Ontology, the Ontology for Biomedical Investigations and the Protein Ontology. The
OBO_Foundry
Argument for the existence of God
In the philosophy of religion, an ontological argument is a deductive philosophical argument, made from an ontological basis, that is advanced in support
Ontological_argument
Bioinformatics initiative
The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species. More specifically
Gene_Ontology
American bioinformatician
used bioinformatics resources and standards, including WormBase, the Sequence Ontology, and the Reactome pathway database, and contributed to international
Lincoln_Stein
Ensembl Gene Ontology DAS Genomics Unified Schema Manatee: Manual Annotation Tool Biocurator.org Open Biomedical Ontologies Sequence Ontology Project Biological
Generic Model Organism Database
Generic_Model_Organism_Database
RNA family
the subject of reviews. Non-coding RNA Dictyostelium class II RNA Sequence Ontology page for Class I RNA Archived 2011-07-21 at the Wayback Machine Rfam
Dictyostelium_class_I_RNA
use of bio-ontologies (including the Gene Ontology, Protein Ontology, The Fission Yeast Phenotype Ontology FYPO, and the Sequence Ontology to describe
Canto_(gene_curation_tool)
Type of knowledge base
Supporting reasoning over inferred ontologies: A knowledge graph acquires and integrates information into an ontology and applies a reasoner to derive new
Knowledge_graph
Chicco, Davide; Masseroli, Marco (2019). "Biological and Medical Ontologies: Protein Ontology (PRO)". Encyclopedia of Bioinformatics and Computational Biology
Protein_Information_Resource
Gene sequence removed from RNA transcripts by ''trans''-splicing
"Oxford reference — Outron". Retrieved 26 September 2019. "The MISO Sequence Ontology Browser — Outron (SO:0001475)". Retrieved 26 September 2019. Clayton
Outron
Description of the structure and function of a genome
organisms have been created, such as Plant-Pathogen Ontology, Plant-Associated Microbe Gene Ontology or DisGeNET. And some others have been implemented
DNA_annotation
into a single data warehouse. It has a core data model based on the sequence ontology and supports several biological data formats, allowing sysadmins to
InterMine
multiple sequence alignment (MSA) and a family tree for each protein family in the library. PANTHER/X (PANTEHR index): Index contains abbreviated ontology which
PANTHER
link], University at Buffalo, led a breakout session to improve the Sequence Ontology from existing ORegAnno and REDfly database conventions within the
Open Regulatory Annotation Database
Open_Regulatory_Annotation_Database
Bioinformatician
Biomedical Ontologies (OBO), National Center for Biomedical Ontology (NCBO), contributing to the Gene Ontology Sequence Ontology, Uberon anatomy ontologies, and
Suzanna_Lewis
Database on Schizosaccharomyces pombe
Phenotype Ontology (FYPO), Used to associate phenotypes with alleles of genes, in comparison to the phenotype of the reference strain Sequence Ontology - used
PomBase
This is a list of ontologies that are part of the OBO Foundry as of January 2020.[update] Hogan WR, Wagner MM, Brochhausen M, Levander J, Brown ST, Millett
List of OBO Foundry ontologies
List_of_OBO_Foundry_ontologies
Systematized collection of data in bioinformatics
have on the transcript. The set of consequence terms, defined by the Sequence Ontology (SO) can be currently assigned to each combination of an allele and
Gene_Disease_Database
British computational biologist
; Yandell, M.; Stein, L.; Durbin, R.; Ashburner, M. (2005). "The Sequence Ontology: A tool for the unification of genome annotations". Genome Biology
Richard_M._Durbin
Sub-sequence DNA in genetics
In genetics, an expressed sequence tag (EST) is a short sub-sequence of a cDNA sequence. ESTs may be used to identify gene transcripts, and were instrumental
Expressed_sequence_tag
Computational analysis of large, complex sets of biological data
standardise certain ontologies. One of the most widespread is the Gene ontology which describes gene function. There are also ontologies which describe phenotypes
Bioinformatics
RNA family
genomic sequences". Genomics Proteomics Bioinformatics. 4 (1): 56–60. doi:10.1016/S1672-0229(06)60017-X. PMC 5054030. PMID 16689703. Sequence Ontology page
Dictyostelium_class_II_RNA
duplication, average sequence length, average length matched, number of domain pairs, and number of unique domain architectures. Gene Ontology Domain-centric
Superfamily_database
Creation of knowledge from structured and unstructured sources
Molecule mining Sequences Data stream mining Learning from time-varying data streams under concept drift Web Data model Metadata Metamodels Ontology Knowledge
Knowledge_extraction
In ontology, the highest kinds or genera of entities
In ontology, the theory of categories concerns itself with the categories of being: the highest genera or kinds of entities. To investigate the categories
Theory_of_categories
Identification and study of genomic sequences
genes are down or upregulated, and what gene ontology terms are recurrent or over-represented. RNA sequence analysis explores gene expression dynamics and
Sequence_analysis
Occurrence of objects or instances
been opposed by so-called process philosophy or process ontology, which ascribes ontological primacy to events and processes. Jaegwon Kim theorized that
Event_(philosophy)
Biological database
resistance genes in newly-sequenced genomes. Each resistance determinant described by the CARD Antibiotic Resistance Ontology (ARO) must include a connection
Comprehensive Antibiotic Resistance Database
Comprehensive_Antibiotic_Resistance_Database
File format standard for electronic business cards
specification. vCards can be embedded in web pages. RDFa with the vCard Ontology can be used in HTML and various XML-family languages, e.g. SVG, MathML
VCard
Database on Drosophilidae genetics
navigation of FlyBase through DNA or protein sequence, by gene or mutant name, or through terms from the several ontologies used to capture functional, phenotypic
FlyBase
Ability to attribute mental states to oneself and others
pub2. PMC 6923148. PMID 24652601. Milton DE (1 October 2012). "On the ontological status of autism: the 'double empathy problem'". Disability & Society
Theory_of_mind
Representation or imitation of a person or thing
simulation does not merely mask a human original; it provides a digital ontology where the avatar becomes the primary reality for the audience, decoupled
Simulacrum
Fundamental unit of cognition
systems with many entities, they employ formal ontologies, such as the Suggested Upper Merged Ontology, which are comprehensive conceptual hierarchies
Concept
Bioinformatics software tool
annotation from yet characterised sequences to the novel one. The functional information is represented via the Gene Ontology (GO), a controlled vocabulary
Blast2GO
Continuous progression from past to future
causality, being a component quantity of various measurements used to sequence events, to compare the duration of events or the intervals between them
Time
Gene Ontology (GO) term enrichment is a technique for interpreting sets of genes making use of the Gene Ontology system of classification, in which genes
Gene_Ontology_Term_Enrichment
Portion of gene's sequence which codes for protein
The coding region of a gene, also known as the coding DNA sequence (CDS), is the portion of a gene's DNA or RNA that codes for a protein. Studying the
Coding_region
American academic
century phenomenology. She is particularly interested in questions about ontology, value, selfhood and human flourishing. Frazier is the founding editor
Jessica_Frazier
American philosopher and logician (1908–2000)
theory. Only after World War II did he, by virtue of seminal papers on ontology, epistemology and language, emerge as a major philosopher. By the 1960s
Willard_Van_Orman_Quine
Algorithm for modelling sequential data
in which input data such as text, images, or audio is converted to a sequence of numerical representations called tokens, and each token is converted
Transformer_(deep_learning)
Branch of philosophy
disease ontologies which extend it, including the infectious disease ontology (IDO) and the mental disease ontology. René Descartes made ontological space
Philosophy_of_medicine
Biomolecule consisting of chains of amino acid residues
gene ontology classifies both genes and proteins by their biological and biochemical function, and by their intracellular location. Sequence similarity
Protein
Concept in natural language processing
biomedical ontologies. They are mainly used to compare genes and proteins based on the similarity of their functions rather than on their sequence similarity
Semantic_similarity
Act of oral stimulation of one's own penis
Arizona. Retrieved 10 June 2025. Lorton, David (1995). "Autofellatio and Ontology". Archived from the original on 29 December 2010. Retrieved 15 April 2006
Autofellatio
Database of rat genomics
data stored in the database: Genes, QTLs, Markers, Maps, Strains, Ontologies, Sequences and References. Of these, six are actively used and regularly updated
Rat_Genome_Database
Software engineering concept
International Conference on Systems, Man, and Cybernatics in 1999. Within an ontology, a context model provides disambiguation of a subject via semantic analysis
Context_model
Nominalism
Logical Investigations (1900–01), as part of what Husserl called "formal ontology". Husserl's trope theory ("theory of moments" in his terminology; German:
Trope_(philosophy)
Statistical Markov model
onto a conveyor belt, where the observer can observe the sequence of the balls but not the sequence of urns from which they were drawn. The genie has some
Hidden_Markov_model
American biotechnologist (born 1950)
1996 "The genome sequence of Drosophila melanogaster"; Science; 2000 "Comparative genomics of the eukaryotes"Science; 2000 "Gene ontology: Tool for the unification
Gerald_M._Rubin
Parallel computing platform and programming model
workloads. The following table offers an approximate summary of the CUDA ontology. The CUDA platform is accessible to software developers through CUDA-accelerated
CUDA
Registry of Web Services in Bioinformatics
enumerate all of their sequence records - this is defined as "NCBI_gi" in the Namespace Ontology. The MOBY Object Ontology is an ontology consisting of IS-A
BioMOBY
Application of computer science in biology
the molecular, cellular, and organism levels is known as gene ontology. The Gene Ontology Consortium's mission is to develop an up-to-date, comprehensive
Computational_biology
Philosophical approach
Process philosophy (also ontology of becoming or processism) is an approach in philosophy that identifies processes, changes, or shifting relationships
Process_philosophy
Interpretation of sensory information
a sentence, presented as a sequence of single words on a computer screen, with a puzzling word out of place in the sequence, the perception of the puzzling
Perception
Region of DNA encouraging transcription
In genetics, a promoter is a sequence of DNA to which proteins bind to initiate transcription of a single RNA transcript from the DNA downstream of the
Promoter_(genetics)
Intelligence in machines
"Automatic annotation and semantic retrieval of video sequences using multimedia ontologies". Proceedings of the 14th ACM international conference on
Artificial_intelligence
Machine learning technique
determines the importance of each component in a sequence relative to the other components in that sequence. In natural language processing, importance is
Attention_(machine_learning)
between data according to rules specified in domain ontologies. Big data Expert system Knowledge base Ontology Sujansky, Walter (August 2001). "Heterogeneous
Heterogeneous_database_system
Counterintuitive result in probability
number of times. The theorem can be generalized to state that any infinite sequence of independent events whose probabilities are uniformly bounded below by
Infinite_monkey_theorem
Philosophical problem-solving principle
that the ontology of folk psychology including such entities as "pain", "joy", "desire", "fear", etc., are eliminable in favor of an ontology of a completed
Occam's_razor
Information systems good practice for data normalization
depends on the ontologic condition that no more than a single truth (about any particular fact or idea) exists, an assertion that is ontologic in both the
Single_source_of_truth
Breed of goat
annotation of only 12,589 genes are done. In addition to that, at least one ontology term was found among 8173 genes. Mason, I. L. A World Dictionary of Livestock
Black_Bengal_goat
High level structures of a software system
quality models". Retrieved 2012-10-08. Osterwalder and Pigneur (2004). "An Ontology for e-Business Models" (PDF). Value Creation from E-Business Models. pp
Software_architecture
Data modeling construct
Weisenberg and Mulwad, Varish and Aggour, Kareem S (2017). "SemTK: An Ontology-first, Open Source Semantic Toolkit for Managing and Querying Knowledge
Semantic_triple
Use of bioinformatic methods to correlate proteins with biofunctions
thought of as, "anything that happens to or through a protein". The Gene Ontology Consortium provides a useful classification of functions, based on a dictionary
Protein_function_prediction
Topics referred to by the same term
identification of corresponding sentences in original and translated texts Ontology alignment, the process of determining correspondences between concepts
Alignment
Expanded set of characters on the URI protocol
Identity Reference and the Web Workshop (IRW). Laboratory for Applied Ontology: 3. Notice that IRIs (Internationalized Resource Identifier) [11] are supposed
Internationalized Resource Identifier
Internationalized_Resource_Identifier
String used to identify a name of a web or internet resource
Identifier (URI), formerly Universal Resource Identifier, is a unique sequence of characters that identifies an abstract or physical resource, such as
Uniform_Resource_Identifier
Deep learning architecture
Mamba is a deep learning architecture focused on sequence modeling. It was developed by two researchers Albert Gu from Carnegie Mellon University and Tri
Mamba (deep learning architecture)
Mamba_(deep_learning_architecture)
Greek-French philosopher (1922–1997)
Autonomy (2009) and Suzi Adams's (Flinders University) Castoriadis's Ontology: Being and Creation (2011). Original French Mai 68 : la brèche [May 68:
Cornelius_Castoriadis
How one process influences another
if, without X, Y would not exist. Hume interpreted the latter as an ontological view, i.e., as a description of the nature of causality; but, given the
Causality
Language-oriented programming paradigm
Natural language programming (NLP) is an ontology-assisted way of programming in terms of natural language sentences, e.g. English. A structured document
Natural_language_programming
Protein-coding gene in humans
ZIP13, a member of the LIV-1 subfamily of ZIP zinc transporters. Gene Ontology annotations associate SLC39A13 with connective tissue development, intracellular
Zinc_transporter_ZIP13
American mathematician and computer scientist (1903–1995)
unsolvability of the Entscheidungsproblem ("decision problem"), the Frege–Church ontology, and the Church–Rosser theorem. Alongside his doctoral student Alan Turing
Alonzo_Church
Type of biological database
variety of data including Gene Ontology (GO) annotations, phenotypes, gene expression, pathway information Protein/RNA sequence annotations Anatomical information
Model_organism_database
position is based on Bhaskar's transcendental arguments for certain ontological and epistemological positions based on what reality must be like in order
Transcendental_realism
Creation spirit in some schools of philosophy
influenced by Gnostic thought and Schopenhauerian interpretation of Platonic ontology, as well as that of Plotinus. Religion portal Albinus (philosopher) Azazil
Demiurge
Protein found in humans
expresses. In macaques, in between DUX4 copies, there is a NUMT sequence. The NUMT sequence changed the methylation landscape, making this hypermethylated
DUX4
Totality of existing entities
virtual reality can inform experience and raises questions about the ontological status of virtual objects. The concept of reality is relevant to many
Reality
Austrian mathematician and philosopher of science (1930–2024)
interpretation of quantum mechanics that draws heavily from premodern ontology and realism. Smith was born February 18, 1930, in Vienna. He graduated
Wolfgang_Smith
Disciplines into which the field of engineering is conventionally divided
University Press, 2010. (pp. 149–150) Wiebe, A. J.; Chan, C. W. (April 2012). "Ontology driven software engineering". 2012 25th IEEE Canadian Conference on Electrical
List_of_engineering_branches
Software in bioinformatics
De novo sequence assemblers are a type of program that assembles short nucleotide sequences into longer ones without the use of a reference genome. These
De_novo_sequence_assemblers
to search or browse the database with genes, species, sequences, orthologous groups, gene ontology (GO) terms or pathway keywords, etc. Another one of its
MicrobesOnline
1981 film by Sam Raimi
Žižek, Slavoj (2000). The Ticklish Subject: The Absent Centre of Political Ontology. Verso. ISBN 978-1-85984-291-1. Paul, Louis (2007). Tales from the Cult
The_Evil_Dead
Object that exists in the imagination
not by sequence. A different name could equally follow, but it would have different social or political significance. In metaphysics and ontology, Austrian
Object_of_the_mind
Class of artificial neural network
This enables RNNs to capture temporal dependencies and patterns within sequences. The fundamental building block of RNN is the recurrent unit, which maintains
Recurrent_neural_network
Bioinformatics software suite
bioinformatics data. Based on an ontology-driven data model, it contains applications for viewing and aligning protein sequences, rendering complex molecular
UTOPIA_(bioinformatics_tools)
System of mathematical set theory
George Boolos in 1989. S, a first-order theory, is two-sorted because its ontology includes "stages" as well as sets. Boolos designed S to embody his understanding
S_(set_theory)
Protein-coding gene in the species Homo sapiens
1016/j.ygeno.2003.10.006. PMID 15028294. "Entrez Gene: FAM19A1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A1". Mehrle A, Rosenfelder
Chemokine-like_protein_TAFA-1
Light-emitting enzyme
product of CG6178 in Drosophila was also found to have high amino acid sequence similarity with firefly luciferase. While it did show high adenylation
Firefly_luciferase
automatically produces functional assignments to the sequences that belong to the metagenome by performing sequence comparisons to databases in both nucleotide
MG-RAST
terms of nucleotide length, spanning 2,882 nucleotides. The Family with Sequence Similarity 200 Member C protein in Homo sapiens is encoded by the FAM200C
ZBED8
British scientist (born 1965)
"Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation". Bioinformatics. 19 (10): 1275–1283.
Robert_Stevens_(scientist)
travel, tourism, insurance
SEQUENCE ONTOLOGY
SEQUENCE ONTOLOGY
SEQUENCE ONTOLOGY
SEQUENCE ONTOLOGY
SEQUENCE ONTOLOGY
SEQUENCE ONTOLOGY
SEQUENCE ONTOLOGY
SEQUENCE ONTOLOGY
SEQUENCE ONTOLOGY
travel, tourism, insurance