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Database of DNA sequencing data
The Sequence Read Archive (SRA, previously known as the Short Read Archive) is a bioinformatics database that provides a public repository for DNA sequencing
Sequence_Read_Archive
Online database from the EBI on Nucleotides
of sequence assembly and other metadata related to sequencing projects. The archive is composed of three main databases: the Sequence Read Archive, the
European_Nucleotide_Archive
File format for sequences and quality scores
@EAS139:136:FC706VJ:2:2104:15343:197393 1:N:18:1 FASTQ files from the INSDC Sequence Read Archive often include a description, e.g. @SRR001666.1 071112_SLXA-EAS1_s_7:5:1:817:345
FASTQ_format
Topics referred to by the same term
National Center for Biotechnology Information's Sequence Read Archive (previously Short Read Archive) Serotonin releasing agent, a type of drug SRA-shooting
SRA
American DNA sequence data analysis company
Center for Biotechnology Information would phase out funding for its Sequence Read Archive (SRA), DNAnexus said it was working with Google Cloud Storage to
DNAnexus
Integer sequence
(sequence A005150 in the OEIS). To generate a member of the sequence from the previous member, read off the digits of the previous member, counting the number
Look-and-say_sequence
Species of fungus
Japan, and previously sequenced C. auris genomes deposited in the National Center for Biotechnology Information's Sequence Read Archive identified a distinct
Candida_auris
Study of RNA transcripts
processed microarray intensities. Sequence data may be stored in public repositories, such as the Sequence Read Archive (SRA). RNA-Seq datasets can be uploaded
Transcriptomics_technologies
Database branch of the US National Library of Medicine
PubChem: A database of freely accessible chemical information. Sequence Read Archive: The SRA stores sequencing data from the next generation of sequencing
National Center for Biotechnology Information
National_Center_for_Biotechnology_Information
Web archive
archive.today (also known as archive.is, among other domains) is a web archiving website that saves snapshots on demand. It has support for JavaScript-heavy
Archive.today
Computational analysis of large, complex sets of biological data
Motif Finding: InterPro, Pfam Used for Next Generation Sequencing: Sequence Read Archive Used in Network Analysis: Metabolic Pathway Databases (KEGG, BioCyc)
Bioinformatics
Species of bacterium
coverage. The GenBank master record can be found here, and the sequence read archive can be found here. Ivanova EP, Flavier S, Christen R. (2004). "Phylogenetic
Psychromonas_antarctica
Virus Discovery Platform
available sequencing datasets (20.4 petabytes of raw data) in the Sequence Read Archive (SRA) in only 11 days and a computing cost of US$23,900. This analysis
Serratus_(virology)
Open access DNA sequence database
in GenBank. Raw sequence reads generated by next-generation sequencing technologies are deposited in the Sequence Read Archive (SRA), rather than in GenBank
GenBank
determine which reads contain a specific 30-mer in the entire NCBI Sequence Read Archive? This task is similar to that which is accomplished by BLAST, however
Bloom filters in bioinformatics
Bloom_filters_in_bioinformatics
Raw sequencing data from the project can be found in the NCBI Sequence Read Archive. Preliminary data has been presented at Genetics Society of America
Drosophila Genetic Reference Panel
Drosophila_Genetic_Reference_Panel
Method of DNA sequence reconstruction
assembling sequencing reads to create full-length (sometimes novel) sequences, without using a template (see de novo sequence assemblers, de novo transcriptome
Sequence_assembly
Process of determining the nucleic acid sequence
DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is
DNA_sequencing
but recently there are more and more metagenomic datasets in the Sequence Read Archive waiting for analysis with AMPHORA2. AmphoraNet is the web server
AMPHORA
Novel by Brandon Sanderson
for the Bondsmith spren. As with its Stormlight Archive predecessors, the unabridged audiobook is read by narration team Michael Kramer and Kate Reading
Rhythm_of_War
Cross-database search engine for health sciences
abundance profiles GEO DataSets: experimental sets of GEO data Sequence read archive: high-throughput sequencing data Cancer Chromosomes: cytogenetic
Entrez
databases, as they house original sequence data. They collaborate with Sequence Read Archive (SRA), which archives raw reads from high-throughput sequencing
List_of_biological_databases
Inquiries into the origins of SARS-CoV-2
June 2021, the NIH announced that a set of sequence data had been removed from the Sequence Read Archive (SRA) in June 2020. The removal was performed
Origin_of_SARS-CoV-2
Science fiction series by Stephen Baxter
The Xeelee Sequence (/ˈziːliː/; ZEE-lee) is a series of hard science fiction novels, novellas, and short stories written by British author Stephen Baxter
Xeelee_Sequence
Numbers obtained by adding the two previous ones
Fibonacci sequence is a sequence in which each element is the sum of the two elements that precede it. Numbers that are part of the Fibonacci sequence are known
Fibonacci_sequence
normal tissue by next-generation sequencing. SRA The Sequence Read Archive (SRA) stores raw sequence data from "next-generation" sequencing technologies
List of RNA-Seq bioinformatics tools
List_of_RNA-Seq_bioinformatics_tools
Methods of compressing data tailored specifically for genomic data
content (e.g., microsatellite sequences) or many sequences exhibit high levels of similarity (e.g., multiple genome sequences from the same species). Additionally
Compression of genomic sequencing data
Compression_of_genomic_sequencing_data
2009 film by Tom Six
The Human Centipede (First Sequence) is a 2009 Dutch body horror film written, directed and co-produced by Tom Six. The independent film concerns a deranged
The Human Centipede (First Sequence)
The_Human_Centipede_(First_Sequence)
Species of bacterium
C4625. https://www.ncbi.nlm.nih.gov/bioproject/433829. Link to NCBI sequence read archive (SRA) https://www.ncbi.nlm.nih.gov/sra?LinkName=biosample_sra&from_uid=8518548
Streptomyces_sp._myrophorea
Scientific instrument that automates the DNA sequencing process
T (thymine). This is then reported as a text string, called a read. Some DNA sequencers can be also considered optical instruments as they analyze light
DNA_sequencer
Cycle through all length-k sequences
In combinatorial mathematics, a de Bruijn sequence of order n on a size-k alphabet A is a cyclic sequence in which every possible length-n string on A
De_Bruijn_sequence
Method used for sequencing random DNA strands
of shotgun reads: In this extremely simplified example, none of the reads cover the full length of the original sequence, but the four reads can be assembled
Shotgun_sequencing
Online database of integer sequences
The On-Line Encyclopedia of Integer Sequences (OEIS) is an online database of integer sequences. It was created and maintained by Neil Sloane while researching
On-Line Encyclopedia of Integer Sequences
On-Line_Encyclopedia_of_Integer_Sequences
Database are derived from two archival databases at the NCBI: The Gene Expression Omnibus (GEO) and the Sequence Read Archive (SRA). The Gene Expression
NCBI_Epigenomics
Succession of nucleotides in a nucleic acid
backbone. In the typical case, the sequences are printed abutting one another without gaps, as in the sequence AAAGTCTGAC, read left to right in the 5' to 3'
Nucleic_acid_sequence
American biologist
databases including GenBank, PubMed, PubMed Central, dbGaP, dbSNP, the Sequence Read Archive (SRA), RefSeq, PubChem, and many more. The internal research program
David_J._Lipman
Research data repository
Pediatric MRI Data Repository Archived 2019-01-10 at the Wayback Machine, dbGaP, dbVaR, and the Sequence Read Archive.[citation needed] 2008 and 2009
National Database for Autism Research
National_Database_for_Autism_Research
Novel by Brandon Sanderson
contains a sequence of flashback chapters, this time from the perspective of Szeth, the Assassin in White. The unabridged audiobook is read by narration
Wind_and_Truth
Mathematical model of computation
devices in modern society that perform a predetermined sequence of actions depending on a sequence of events with which they are presented. Simple examples
Finite-state_machine
Special character sequences in the C programming language
console, and the inverse translation is done when text files are read. A hex escape sequence must have at least one hex digit following \x, with no upper
Escape_sequences_in_C
File format for genomic variation data
genome sequences. The FASTQ format, used to represent DNA sequencer reads along with quality scores. The SAM format, used to represent genome sequencer reads
Variant_Call_Format
Software in bioinformatics
in the assembly, and do not perform well on read sets that contain repeat regions. Early de novo sequence assemblers, such as SEQAID (1984) and CAP (1992)
De_novo_sequence_assemblers
DNA or RNA sequence that matches its complement when read backwards
Palindromic sequences play an important role in molecular biology. Because a DNA sequence is double stranded, the base pairs are read, (not just the
Palindromic_sequence
Acronym for rainbow colors
ROYGBIV is an acronym for the sequence of hues commonly described as making up a rainbow: red, orange, yellow, green, blue, indigo, and violet. There are
ROYGBIV
2011 film by Tom Six
The Human Centipede 2 (Full Sequence) is a 2011 psychological body horror film written, directed, and co-produced by Tom Six. An international co-production
The Human Centipede 2 (Full Sequence)
The_Human_Centipede_2_(Full_Sequence)
Taking in the meaning of letters or symbols
teaching kids to read just took another hit to its credibility, APM reports". NPR. Frank Smith. "Understanding Reading" – via Internet Archive. Robert Slavin
Reading
Method used for display options on video text terminals
ANSI escape sequences are a standard for in-band signaling to control cursor location, color, font styling, and other options on video text terminals
ANSI_escape_code
2026 American reality comedy film
as well as brand new ones, and never-before-seen footage. The opening sequence begins in 1998 with a young Johnny Knoxville shooting himself in the chest
Jackass:_Best_and_Last
Form of non-volatile memory used in computers and other electronic devices
Read-only memory (ROM) is a form of non-volatile memory used in computers and other electronic devices. Data stored in ROM cannot be electronically modified
Read-only_memory
and computational biology, Genome survey sequences (GSS) are nucleotide sequences similar to expressed sequence tags (ESTs) that the only difference is
Genome_survey_sequence
1964 spy film by Guy Hamilton
extensive use of technology and gadgets by Bond, an extensive pre-credits sequence that stood largely alone from the main plot, multiple foreign locales and
Goldfinger_(film)
Natural number
Sloane, N. J. A. (ed.). "Sequence A001263 (Triangle of Narayana numbers T(n,k) = C(n-1,k-1)*C(n,k-1)/k with 1 <= k <= n, read by rows. Also called the
50_(number)
Raw data of genome sequencing
specific information in the header section. Alignments—The read name, read sequence, read quality, alignment information, and custom tags are all included
BAM_(file_format)
File format for DNA or protein sequences
text-based format for representing either nucleotide sequences or amino acid (protein) sequences, in which nucleotides or amino acids are represented
FASTA_format
bioinformatics, a DNA read error occurs when a sequence assembler changes one DNA base for a different base. The reads from the sequence assembler can then
DNA_read_errors
Infinite sequence in mathematics
Kolakoski sequence, sometimes also known as the Oldenburger–Kolakoski sequence, is an infinite sequence of symbols {1,2} that is the sequence of run lengths
Kolakoski_sequence
Sequence of DNA that determines traits in an organism
base pairing, the sequence of one strand completely specifies the sequence of its complement; hence only one strand needs to be read by the enzyme to produce
Gene
Sequence that reads the same forwards and backwards
palindrome (/ˈpælɪndroʊm/) is a word, number, phrase, or other sequence of symbols that reads the same backwards as forwards, such as madam or racecar, the
Palindrome
DNA sequencing using the concept of massively parallel processing
454 Life Sciences launched the GS20, the first NGS DNA sequencer. This system provided reads approximately 400–500 bp long with 99% accuracy, enabling
Massively_parallel_sequencing
Lab technique in cellular biology
concentrations. After sequencing, read counts of spike-in sequences are used to determine the relationship between each gene's read counts and absolute quantities
RNA-Seq
List of standard rules to translate DNA encoded information into proteins
ribosome. In the standard code, the sequence AUG—read as methionine—can serve as a start codon and, along with sequences such as an initiation factor, initiates
DNA_and_RNA_codon_tables
Process in bioinformatics that identifies equivalent sites within molecular sequences
alignment of a sequence to a reference by encoding a sequence of events (e.g. match/mismatch, insertions, deletions). Ref. : GTCGTAGAATA Read: CACGTAG—TA
Sequence_alignment
Discipline in genetics
short sequences (100 to 1000 base pairs), longer DNA sequences must be broken into random small segments which are then sequenced to obtain reads. Multiple
Genomics
9th-century Latin poem
The Swan Sequence (incipit: Clangam, filii "I shall cry out, my sons") is an anonymous Carolingian-Aquitainian Latin poem sequence first written around
Swan_Sequence
Algorithm that generates an approximation of a random number sequence
generating a sequence of numbers whose properties approximate the properties of sequences of random numbers. The PRNG-generated sequence is not truly
Pseudorandom_number_generator
1973 thriller film directed by Fred Zinnemann
the opening sequence was not shot in the Élysée Palace courtyard but at the Hôtel de Soubise, the main office of the French National Archives. The two palaces
The_Day_of_the_Jackal_(film)
utilizing long third generation sequencing reads, such as those obtained using the PacBio RS DNA sequencer. These sequences are, on average, 10,000–15,000 base
Hybrid_genome_assembly
Palindromic prime number
1000000000000066600000000000001 (1030 + 666 × 1014 + 1), a number which reads the same both backwards and forwards and is only divisible by itself and
Belphegor's_prime
DNA sequencing method
During analysis, the computer will group all reads with the same index together. Illumina uses a "sequence by synthesis" approach. This process takes place
Illumina_dye_sequencing
Early American electromechanical computer (1944)
The Harvard Mark I, or IBM Automatic Sequence Controlled Calculator (ASCC), was one of the earliest general-purpose electromechanical computers used in
Harvard_Mark_I
Lossless data compression algorithms
there exists finite lossless encoders for every sequence that achieve this bound as the length of the sequence grows to infinity. In this sense an algorithm
LZ77_and_LZ78
of probes of known sequence) on single DNA molecules in each read, and generating maps of the location of such events. Multiple reads can be assembled into
Positional_sequencing
Genre of card games
Ace to King) or descending sequence. Occasionally both are aimed at in the same game. The card starting the required sequence is known as the foundation
Solitaire
German actor (1942–2020)
recognition for his lead role in the 2009 film The Human Centipede (First Sequence) and also starred in the third entry in 2015. On television, he had a recurring
Dieter_Laser
Sequence of books
title and free-standing storyline, and can thus be read independently or out of sequence. A novel sequence contains story arcs or themes that cross over several
Book_series
Opening sequence of The Simpsons
The Simpsons opening sequence is the title sequence of the American animated television series The Simpsons. It is accompanied by "The Simpsons Theme"
The_Simpsons_opening_sequence
Digital nucleic acid sequence database
Reference genomes assembly requires reads overlapping, creating contigs, which are contiguous DNA regions of consensus sequences. If there are gaps between contigs
Reference_genome
Connection standard for electronic musical instruments
MIDI data can be transferred via MIDI or USB cable, or recorded to a sequencer or digital audio workstation for editing or playback. MIDI also defines
MIDI
1895 short story collection by Robert W. Chambers
Windus in 1895 (316 pages). The book contains nine short stories and a sequence of poems; while the first stories belong to the genres of supernatural
The_King_in_Yellow
Increasing sequence of reduced fractions
proof, that each new term in a Farey sequence expansion is the mediant of its neighbours. Farey's letter was read by Cauchy, who provided a proof in his
Farey_sequence
Portion of gene's sequence which codes for protein
The coding region of a gene, also known as the coding DNA sequence (CDS), is the portion of a gene's DNA or RNA that codes for a protein. Studying the
Coding_region
Family of DNA sequences found in prokaryotic organisms
repeats) is a family of DNA sequences found in the genomes of prokaryotic organisms such as bacteria and archaea. Each sequence within an individual prokaryotic
CRISPR
Substrings of length k contained in a biological sequence
k} contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed
K-mer
CPU instruction to simultaneously read and write a value in memory
accessed in a read operation. This term is also associated with RAID levels that perform actual write operations as atomic read–modify–write sequences. Such RAID
Read–modify–write
Molecule that carries genetic information
these cases, some DNA sequences do double duty, encoding one protein when read along one strand, and a second protein when read in the opposite direction
DNA
RNA that is read by the ribosome to produce a protein
single-stranded molecule of RNA that corresponds to the genetic sequence of a gene, and is read by a ribosome in the process of synthesizing a protein. mRNA
Messenger_RNA
First letter of the Latin alphabet
used in handwriting and fonts based on it, especially fonts intended to be read by children, and is also found in italic type. In English, the name of the
A
Set of JSON communications profiles
separator character can be used to delimit the sequences. In addition, it is suggested that each JSON text sequence be followed by a line feed character to allow
JSON_streaming
Creating sequence of numbers that cannot be predicted
process by which, often by means of a random number generator (RNG), a sequence of numbers or symbols is generated that cannot be reasonably predicted
Random_number_generation
List of people involved in the production of media
a separate sequence of their own, the correct term is a title sequence (e.g., the familiar James Bond and The Pink Panther title sequences). Opening credits
Credits
Natural number
expansion, the result has the same six-digit repeating sequence after the decimal point, but the sequence can start with any of those six digits. In decimal
7
A web archive file is an archive file that contains all resources necessary to display a web page, including the base HTML as well as images, audio, video
List of web archiving file formats
List_of_web_archiving_file_formats
Annually recurring fixed sequence of Christian feast days
of saints, are to be observed, and which portions of scripture are to be read. Distinct liturgical colours may be used in connection with different seasons
Liturgical_year
American television series
we've met everyone and seen their backstory." There is an opening credits sequence, each with a distinct montage and song selection, in episode 7 "Review
The_Bear_(TV_series)
International scientific research project (1990–2003)
March 2004 which contains additional sequence information. Works by or about Human Genome Project at the Internet Archive Portals: Biology Technology Medicine
Human_Genome_Project
Sequencing all the DNA of an individual at once
genome sequencing, is the process of determining the entirety of the DNA sequence of an organism's genome at a single time. This entails sequencing all of
Whole_genome_sequencing
Configuration file format
non-empty and should not contain the delimiter. Some flavours allow escape sequences in the value. In the Windows implementation, the equals sign and the semicolon
INI_file
block is actually considered as a fixed byte sequence: 0x52 0x61 0x72 0x21 0x1a 0x07 0x00 "RAR 5.0 archive format". Retrieved 2023-10-19. Tool Interface
List_of_file_signatures
American actress (born 1982)
Girl". New York. Archived from the original on February 19, 2015. Retrieved August 1, 2017. Buchanan, Kyle (August 30, 2011). "Read a Very Surprising
Anne_Hathaway
American biotechnology company
provider in late 2010. A new version of the sequencer was released in April 2013 it produced longer sequence reads and higher throughput than the original
Pacific_Biosciences
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
Boy/Male
American, Anglo, Australian, British, English, Scottish
Redheaded; With Red Hair; Surname
Boy/Male
Arabic, Australian, British, English, Muslim
Leader; Red
Male
English
Variant spelling of English Read, REID means "red-headed; ruddy complexioned."Â
Boy/Male
English
Red haired.
Male
English
Variant spelling of English Read, REED means "red-headed; ruddy complexioned."
Male
English
Variant spelling of English Red, REDD means "red-headed; ruddy complexioned."
Surname or Lastname
English
English : variant spelling of Read 1.
Surname or Lastname
English
English : variant of Read 1.
Boy/Male
American, Anglo, Australian, British, Christian, English, Jamaican
Form of Reed; A Reed; Red-haired
Boy/Male
American, Anglo, British, Christian, English, German, Hindu, Indian, Scottish
Red-headed; Red Haired; Ruddy Complexioned
Boy/Male
English American Scottish
Red haired.
Boy/Male
American, British, Christian, English, Scottish
Redheaded; Surname; Red Headed; Ruddy Complexioned
Surname or Lastname
English
English : variant spelling of Read.
Boy/Male
English
Red.
Boy/Male
British, English
Red Haired
Boy/Male
English
Red.
Male
English
English surname transferred to forename use, derived from an Old English byname, Red, READ means "red-headed or ruddy-complexioned."Â
Boy/Male
American, Australian, British, Chinese, Christian, English, Scottish, Swedish
A Ruddy Complexion; Red Haired; Surname
Surname or Lastname
English
English : nickname for a person with red hair or a ruddy complexion, from Middle English re(a)d ‘red’.English : topographic name for someone who lived in a clearing, from an unattested Old English rīed, r̄d ‘woodland clearing’.English : Read in Lancashire, the name of which is a contracted form of Old English rǣghēafod, from rǣge ‘female roe deer’, ‘she-goat’ + hēafod ‘head(land)’; Rede in Suffolk, so called from Old English hrēod ‘reeds’; or Reed in Hertfordshire, so called from an Old English ryhð ‘brushwood’.English : A family called Read were established in America in the early 18th century by John Read, who was born in Dublin, sixth in descent from Sir Thomas Read of Berkshire, England. His son, George Read (1733–98), was one of the signers of the Declaration of Independence, and as a lawyer helped frame the Constitution.
Female
Greek
Variant spelling of Greek Rhea, REAH means "ease, flow."
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
Girl/Female
American, Australian, French, Hebrew
God is My Judge
Girl/Female
Indian
Faithful, To believe
Boy/Male
Indian
Leader of the religion (Islam)
Surname or Lastname
English
English : variant of Burger.
Male
Japanese
(裕) Japanese name YUTAKA means "abundant, prosperous, wealthy."
Girl/Female
Hindu
Traditional
Male
Hebrew
(מï‹×ָב) Hebrew name MOWAB means "water," i.e. "seed," hence "of his father." In the bible, this is the name of a son of Lot.
Boy/Male
Tamil
Anbumadi | அநà¯à®ªà¯à®®à®¾à®Ÿà¯€
Kind and intelligent
Girl/Female
Irish
muirne means “high-spirited, festive.†Muirne loved Conall who was from an opposing tribe. Her father, a druid, opposed the match and had Conall killed but not before Muirne had conceived a son, who grew up to be the legendary warrior Fionn Mac Cool(read the legend) and who later avenged the death of his father.
Boy/Male
Muslim
Noble
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
v. t.
To be at the head of; to put one's self at the head of; to lead; to direct; to act as leader to; as, to head an army, an expedition, or a riot.
n.
A headdress; a covering of the head; as, a laced head; a head of hair.
a.
Lacking spirit; dull; lusterless; cheerless; as, dead eye; dead fire; dead color, etc.
v. i.
To produce a certain effect when read; as, that sentence reads queerly.
n.
That which follows as a result; a sequence.
v. i.
To study by reading; as, he read for the bar.
v. t.
To make a special study of, as by perusing textbooks; as, to read theology or law.
n.
All five cards, of a hand, in consecutive order as to value, but not necessarily of the same suit; when of one suit, it is called a sequence flush.
v. t.
To decree or announce as a sentence.
v. t.
Saying; sentence; maxim; hence, word; advice; counsel. See Rede.
a.
Inspiring with reverential fear; awful' venerable; as, dread sovereign; dread majesty; dread tribunal.
n.
Simple succession, or the coming after in time, without asserting or implying causative energy; as, the reactions of chemical agents may be conceived as merely invariable sequences.
n.
The state of being sequent; succession; order of following; arrangement.
imp. & p. p.
of Read
n.
Rennet. See 3d Reed.
v. t.
To go over, as characters or words, and utter aloud, or recite to one's self inaudibly; to take in the sense of, as of language, by interpreting the characters with which it is expressed; to peruse; as, to read a discourse; to read the letters of an alphabet; to read figures; to read the notes of music, or to read music; to read a book.
v. t.
To interpret; to explain; as, to read a riddle.