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analysis and interpretation (either directly, or via user downloads). Microarray databases can fall into two distinct classes: A peer reviewed, public repository
Microarray_databases
Collection of microscopic DNA spots attached to a solid surface
A DNA microarray (also commonly known as a DNA chip or biochip) is a collection of microscopic DNA spots attached to a solid surface. Scientists use DNA
DNA_microarray
Small-scale two-dimensional array of samples on a solid support
carbohydrate microarrays is expanding. Types of microarrays include: DNA microarrays, such as cDNA microarrays, oligonucleotide microarrays, BAC microarrays and
Microarray
Microarray analysis techniques are used in interpreting the data generated from experiments on DNA (Gene chip analysis), RNA, and protein microarrays
Microarray analysis techniques
Microarray_analysis_techniques
find databases containing cancer data among the List of biological databases or Microarray databases. Cancer Research List of biological databases Microarray
List of databases for oncogenomic research
List_of_databases_for_oncogenomic_research
Tissue arrangement technique
Tissue microarrays (also TMAs) consist of paraffin blocks in which up to 1000 separate tissue cores are assembled in array fashion to allow multiplex
Tissue_microarray
Other databases Nucleosome positioning region database Generic gene expression databases Microarray gene expression databases These databases collect
List_of_biological_databases
Database of biological information
genomics, proteomics, metabolomics, microarray gene expression, and phylogenetics. Information contained in biological databases includes gene function, structure
Biological_database
Yang IV (2006). "Use of External Controls in Microarray Experiments". DNA Microarrays, Part B: Databases and Statistics. Methods in Enzymology. Vol. 411
RNA_spike-in
Study of RNA transcripts
biological sciences. There are two key contemporary techniques in the field: microarrays, which quantify a set of predetermined sequences, and RNA-Seq, which
Transcriptomics_technologies
Gene expression data repository
are derived from microarray or RNA-Seq experimental data. These data need to conform to the minimum information about a microarray experiment (MIAME)
Gene_Expression_Omnibus
Evaluation (UniPROBE) is database of DNA-binding proteins determined by protein-binding microarrays. Protein microarray DNA-binding domain Newburger
UniPROBE
Bioinformatics association
meeting on Microarray Gene Expression Databases in recognition of the need to establish standards for sharing and storing data from DNA microarray experiments
FGED_Society
Detection of mRNA molecules
reliable than others; some are absent. Gene annotation databases change regularly, and various databases refer to the same protein by different names, reflecting
Gene_expression_profiling
Collection of information about glass
of glass database contents is not complete, and it may not be up to date. For full features see the references section below. All databases contain citations
Glass_database
Branch of biology that studies biological systems at the molecular level
membrane are probed for modifications using specific substrates. A DNA microarray is a collection of spots attached to a solid support such as a microscope
Molecular_biology
Set of all RNA molecules in one cell or a population of cells
The first transcriptome studies were based on microarray techniques (also known as DNA chips). Microarrays consist of thin glass layers with spots on which
Transcriptome
American geneticist
involved with the Stanford Microarray Database, an early attempt to organize the extensive data generated by DNA microarray analysis. In 2012, Sherlock
Gavin_Sherlock
functional), transcriptomic data (e.g., single-cell/ bulk RNA-sequence and microarray data), proteomic data (e.g., mass spectrometry evidence and quantitative
Eukaryotic_Pathogen_Database
The NONCODE database is a collection of expression and functional lncRNA data obtained from re-annotated microarray studies. lncRNA Bu, Dechao; Yu, Kuntao;
NONCODE
Unicellular algae responsible for the formation of chalk
"Cocco Express – Coccolithophorids Expressed Sequence Tags (EST) & Microarray Database". Archived from the original on 12 May 2021. Retrieved 16 June 2024
Gephyrocapsa_huxleyi
Calcium carbonate scales covering some phytoplankton species
coccolithophores and other nannofossils. Cocco Express - Coccolithophorids Expressed Sequence Tags (EST) & Microarray Database Possible functions of Coccoliths
Coccolith
Biological database
sequenced pathogen genomes Functional interpretation of RNA sequencing and microarray experiments The rapid cross-checking of phenotypic differences between
PHI-base
expression database and tools to analyse the data. It exists in two versions, biomedical and plant, depending on the species of the underlying microarray and
Genevestigator
Gene expression database
is a database maintained by the European Bioinformatics Institute that provides information on gene expression patterns from RNA-Seq and Microarray studies
Expression_Atlas
A reverse phase protein lysate microarray (RPMA) is a protein microarray designed as a dot-blot platform that allows measurement of protein expression
Reverse phase protein lysate microarray
Reverse_phase_protein_lysate_microarray
Topics referred to by the same term
property database Integrated Nuclear Fuel Cycle Information System#Modules Magyar agár database Microarray database Message Addressing Database, for WS-Addressing
MADB
Medical condition
1q21.1 microdeletion was first identified in 2008 through a chromosomal microarray studies published in Nature Genetics and the New England Journal of Medicine
1q21.1_deletion_syndrome
This is a compilation of databases, web portals, and servers used for cataloging microRNAs and their targets. MicroRNAs (miRNAs) represent an important
MicroRNA and microRNA target database
MicroRNA_and_microRNA_target_database
organisms to microarray data to IDs to RNA/protein expression. Chado makes extensive use of controlled vocabularies to type all entities in the database; for
Generic Model Organism Database
Generic_Model_Organism_Database
Software project for the analysis of genomic data
provides software for associating microarray and other genomic data in real time to biological metadata from web databases such as GenBank, LocusLink and
Bioconductor
DNA reverse transcribed from RNA
profiles in bulk tissue, single cells, or single nuclei in assays such as microarrays, qPCR, and RNA-seq. In natural forms, cDNA is produced by retroviruses
Complementary_DNA
Jauregui R, Kel-Margoulis O, Wingender E (September 2006). "Beyond microarrays: find key transcription factors controlling signal transduction pathways"
Transcription factor binding site databases
Transcription_factor_binding_site_databases
Genomic study of immune system regulation and pathogen response
benefit from cDNA microarray analysis of gene expression,” and, thus, heralded the rise of immunomics. Limited by available microarrays and a non-complete
Immunomics
Technique for detecting polymorphisms in a genome
In molecular biology, SNP array is a type of DNA microarray which is used to detect polymorphisms within a population. A single nucleotide polymorphism
SNP_array
Database
Array-based Detection of Exons) is a database for the annotation of genome-wide tiling-array data in Arabidopsis DNA microarray Toyoda, Tetsuro; Shinozaki Kazuo
Artade
interpretation of large lists of genes derived from genomic studies, e.g. microarray and proteomics studies. DAVID can be found at https://david.ncifcrf.gov/
DAVID
Computational analysis of large, complex sets of biological data
multiple other databases. Databases can have different formats, access mechanisms, and be public or private. Some of the most commonly used databases are listed
Bioinformatics
Gene expression database
retrieval and comparison of gene expression patterns from RNA-Seq, scRNA-Seq, Microarray, In situ hybridization and EST studies, across multiple animal species
Bgee
Online database of metabolic pathways
suite of metabolomics databases that also includes Human Metabolome Database, DrugBank, and the Toxin and Toxin-Target Database (T3DB). While DrugBank
Small Molecule Pathway Database
Small_Molecule_Pathway_Database
Medical condition
dilation of the ascending aorta. The diagnosis is established by chromosomal microarray analysis detecting the duplication. There is no cure; treatment involves
7q11.23_duplication_syndrome
Online bioinformatics database
public and inhouse microarray and proteomic datasets. Interferome offers many ways of searching and retrieving data from the database: Identify interferon
Interferome
that integrates databases and tools of gene ontology. Kyoto Encyclopedia of Genes and Genomes (KEGG): a large collection of databases of genes, genomes
MicrobesOnline
Glass colored with uranium oxide
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Uranium_glass
Genome research project
expression in Humans, a sub project was created by GENCODE to develop custom microarray platforms capable of quantifying the transcripts in the GENCODE lncRNA
GENCODE
Glass object created by dripping molten glass into cold water
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Prince_Rupert's_drop
Biological database
website that uses DECIPHER as one of the six human genetic databases and seven model organism databases to integrate information. Firth HV, Richards SM, Bevan
DECIPHER
Protein found in humans
Stanford Microarray Database. 2010. Retrieved 2015-04-27.{{cite web}}: CS1 maint: deprecated archival service (link) 2€51Stanford Microarray Database (2010)
Glutamate-rich_protein_3
Software for understanding biological data
computational biology and bioinformatics, including genomics, proteomics, microarrays, systems biology, evolution, and text mining. Prior to the emergence
Machine_learning_in_biology
Process by which a gene can code for multiple proteins
the human genome. There is a collection of alternative splicing databases. These databases are useful for finding genes having pre-mRNAs undergoing alternative
Alternative_splicing
Graph measuring gene relationships
generated by high-throughput gene expression profiling technologies such as Microarray or RNA-Seq. Co-expression networks are used to analyze single cell RNA-Seq
Gene_co-expression_network
large databases as a 3D landscape. In what Hillier et al. call a "pioneering study," VxInsight has been used to analyze gene expression (i.e. microarray) data
VxInsight
Melting points of chemical mixtures
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Liquidus_and_solidus
Project to build Genotype to Phenotype database
Genotype to Phenotype Databases: a Holistic Approach (GEN2PHEN) is a European project aiming to develop a knowledge web portal integrating information
GEN2PHEN
Hydrolysis probe
Identification assays DNA quantification SNP genotyping Verification of microarray results Quantitative PCR SYBR Green Reverse transcription polymerase chain
TaqMan
Human gene database maintained by the Weizmann Institute of Science
repositories-the primary database. However, the information provided by the primary sequence databases (lower level databases) focus on different aspects
GeneCards
Application of statistical techniques to biological systems
(2003). Statistical Analysis of Gene Expression Microarray Data. Wiley-Blackwell. Terry Speed (2003). Microarray Gene Expression Data Analysis: A Beginner's
Biostatistics
Iranian-American physician-scientist
microenvironments. Alizadeh is recognized for developing the Lymphochip microarray and for his early cancer molecular taxonomy work defining the molecular
Ash_Alizadeh
for biologists to a comprehensive system of bioinformatics software, databases, documentation, training and support, on a subscription basis. While clearly
ANGIS
Optical lenses that darken on exposure to certain wavelengths of light
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Photochromic_lens
GEO) as well as many large and small databases that have something to do with neuroscience including Gemma (microarray data from the nervous system), CCDB
Neuroscience Information Framework
Neuroscience_Information_Framework
Genomics centre in Toronto, Canada
databases developed from supported projects, namely The Chromosome 7 Database, The Database of Genomic Variants, the Segmental Duplication Database,
Centre_for_Applied_Genomics
Lowering the temperature of a liquid below its freezing point without it becoming a solid
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Supercooling
Sequencing all the DNA of an individual at once
public scientific databases, such as locus specific databases. Although only anonymous patient data are submitted to locus specific databases, patients might
Whole_genome_sequencing
Class of short biopolymers
DNA microarrays are a useful analytical application of oligonucleotides. Compared to standard cDNA microarrays, oligonucleotide based microarrays have
Oligonucleotide
American biotech company
Affymetrix is now Applied Biosystems, a brand of DNA microarray products sold by Thermo Fisher Scientific that originated with an American biotechnology
Affymetrix
American businessman and biotechnology entrepreneur
birth control pill, the nicotine patch, corticosteroids, and the DNA microarray. Zaffaroni was born on February 27, 1923, in Montevideo. Zaffaroni was
Alejandro_Zaffaroni
Molecular biology technique
of organisms. The general goal of the technique is similar to the DNA microarray. However, SAGE sampling is based on sequencing mRNA output, not on hybridization
Serial analysis of gene expression
Serial_analysis_of_gene_expression
MAGIChips, also known as "microarrays of gel-immobilized compounds on a chip" or "three-dimensional DNA microarrays", are devices for molecular hybridization
MAGIChip
Opaque or translucent, milk white or colored glass
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Milk_glass
Human protein
mode-of-action network for treatment effective prediction using large scale microarray database". BMC Systems Biology. 7 (Suppl 5): S5. doi:10.1186/1752-0509-7-S5-S5
UPF0488
Protein-coding gene in the species Homo sapiens
Barrette T, Pandey A, Chinnaiyan AM (2004). "ONCOMINE: a cancer microarray database and integrated data-mining platform". Neoplasia. 6 (1): 1–6. doi:10
Hyaluronan-mediated motility receptor
Hyaluronan-mediated_motility_receptor
Wiki about DNA variations
links to scientific articles and personal genomics web sites, as well as microarray information about that SNP. Thus SNPedia may support the interpretation
SNPedia
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Chemically_strengthened_glass
Large-scale study of proteins
micro array technology, to produce reverse-phase protein microarrays. In this type of microarrays, the whole collection of protein themselves are immobilized
Proteomics
American academic
(2003). Improving the specificity of biological signal detection from microarray data (PhD thesis). Stanford University. ProQuest 305300710. Fogg, Christiana
Olga_Troyanskaya
Techniques used to study microbe gene expression
and performing whole-metatranscriptomics shotgun sequencing. Although microarrays can be exploited to determine the gene expression profiles of some model
Metatranscriptomics
standards are available for a vast variety of experiment types including microarray (MIAME), RNAseq (MINSEQE), metabolomics (MSI) and proteomics (MIAPE).
Minimum_information_standard
Biostatistician
supervised and unsupervised machine learning, and related issues in microarray analysis". Tseng is leading a research group of Bioinformatics and Statistical
George_Tseng
Sequencing of all the exons of a genome
financial factors. Two such technologies are microarrays and whole-genome sequencing.[citation needed] Microarrays use hybridization probes to test the prevalence
Exome_sequencing
humanus Rhodnius prolixus Genome browser Community annotation system Microarray and gene expression repository Controlled vocabularies for anatomy, insecticide
VectorBase
ArrayTrack is a multi-purpose bioinformatics tool primarily used for microarray data management, analysis, and interpretation. ArrayTrack was developed
ArrayTrack
Measure the amount of a target entity
solution by Flow cytometry Molecular biology techniques such as DNA microarrays, in situ hybridization, combined to PCR, Computational genomics, and
Assay
Science of using a material's refractive index for optical effects
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Gradient-index_optics
Rare genetic syndrome
terminal and interstitial deletions are too small. The availability of DNA microarray technology for revealing multiple genetic problems simultaneously has
22q13_deletion_syndrome
recovered by affinity selection and associated RNAs are interrogated by microarray and computational analyses. Their results show that RNA-binding proteins
RNA-binding_protein_database
Type of safety glass processed to increase its strength
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Tempered_glass
Minimum information standard
of experimental glycan data and databases for the deposition of interaction analysis data (e.g. from glycan microarray experiments) and structural analysis
Minimum Information Required About a Glycomics Experiment
Minimum_Information_Required_About_a_Glycomics_Experiment
Echinoderm genomic database
Echinobase is a Model Organism Database (MOD). It supports the international research community by providing a centralized, integrated web based resource
Echinobase
American computer scientist
research include work done with biologists on pattern discovery for microarrays, combinatorial design, network inference, and protein docking; work done
Dennis_Shasha
Transparent non-crystalline solid material
March 2020. Retrieved 5 March 2020. "High temperature glass melt property database for process modeling"; Eds.: Thomas P. Seward III and Terese Vascott; The
Glass
Type of optical glass
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Flint_glass
Series of chemical reactions resulting in a cell response
enable data exchange with other pathway databases, such as the Cycs, KEGG and amaze, and molecular interaction databases, such as BIND and HPRD. The next data
Biochemical_cascade
Genetics database
et al. (2001). "High-Throughput Variation Detection and Genotyping Using Microarrays". Genome Research. 11 (11): 1913–1925. doi:10.1101/gr.197201. PMC 311146
DbSNP
Korean-American computer scientist
dissertation about support vector machines and their applications to microarray and satellite data. She joined the Ohio State faculty in 2002 and was
Yoonkyung_Lee
Clear glass with microscopic metal particles sensitive to UV light
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Photosensitive_glass
"BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis". Bioinformatics. 21 (16): 3439–3440. doi:10
BioMart
Biotechnology software company
Bioinformatics Computational genomics Computational biology Microarray analysis DNA microarray Pathway analysis QIAGEN N.V. Ingenuity Pathway Analysis ingenuity
QIAGEN_Silicon_Valley
Glass material used in lenses
Anti-reflective coating Chemically strengthened glass Corrosion Dealkalization DNA microarray Hydrogen darkening Insulated glazing Porous glass Self-cleaning glass
Thoriated_glass
American personal genomics company
DNA is extracted and amplified. The amplified DNA is applied to a glass microarray chip manufactured by Illumina, which contains microscopic beads, each
23andMe
travel, tourism, insurance
MICROARRAY DATABASES
MICROARRAY DATABASES
MICROARRAY DATABASES
MICROARRAY DATABASES
MICROARRAY DATABASES
MICROARRAY DATABASES
MICROARRAY DATABASES
MICROARRAY DATABASES
MICROARRAY DATABASES
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